PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G171400.1.p
Common NameGLYMA_06G171400, LOC100779771
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 885aa    MW: 97382.6 Da    PI: 8.2104
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G171400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.41.8e-18794873186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W+ +ev++Li +r+e+ er++  k +++lWee+s+k+ + g+ rsp qCk+ w +l  +y+ ik+ ++k+      ++py +++e
  Glyma.06G171400.1.p 794 KWKTEEVKKLIGMREELSERFQVVKGRMALWEEISQKLLADGICRSPGQCKSLWTSLVVKYEGIKNEDRKK------SWPYIEDME 873
                          7******************************************************************9984......6******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.103.5E-6877327IPR001279Metallo-beta-lactamase
SuperFamilySSF562816.1E-7378492IPR001279Metallo-beta-lactamase
SMARTSM008492.3E-2590287IPR001279Metallo-beta-lactamase
PfamPF007533.0E-1091235IPR001279Metallo-beta-lactamase
PfamPF075211.1E-6433464IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
Gene3DG3DSA:1.10.10.602.3E-4787851IPR009057Homeodomain-like
PROSITE profilePS500908.327787851IPR017877Myb-like domain
PfamPF138377.6E-15792875No hitNo description
CDDcd122034.18E-19793858No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MSALTSLSLS LRTLSLRPKP TTLSASLSAI PGSSDGSKTK VPPRKRRTGR IEGPRKSMED  60
SVQRKMEQFY EGSDGPPLRI LPIGGLGEIG MNCMLVGNND RYILIDAGVM FPDYDELGVQ  120
KIIPDTTFIR KWSHKIEALI ITHGHEDHIG ALPWVIPALD SNTPIFASSF TMELIKKRLK  180
EHGIFVPSRL KVFRTRKKFV AGPFEIEPIR VTHSIPDCCG LVLRCSDGTI LHTGDWKIDE  240
TPLDGKVFDR EALEELSKEG VTLMMSDSTN VLSPGRTISE SVVADALLRH ISASKGRVIT  300
TQFASNLHRL GSVKAAADLT GRKLVFVGMS LRTYLDAAWK DGKAPIDPST LVKAEDIDAY  360
APKDLLIVTT GSQAEPRAAL NLASYGSSHA FKLAKEDVVL YSAKVIPGNE SRVMKMLNRI  420
SEIGSTIVMG KNEGLHTSGH AYRGELEEIL RIVKPQHFLP IHGELLFLKE HELLGKSTGI  480
RHTAVIKNGE MLGVSHLRNR RVLSNGFISL GKENLQLKYS DGDRAFGTSS DLFIDERLRI  540
ALDGIIVISM EIFRPKILDG SAENTLKGKI RITTRCLWLD KGKLMDALYK AARAALSSCP  600
VKSPLAHIER IVSEVLRKMV RKYSGKRPEV IAIAIEKPAA ILADEINTKL SGKSHVGLGM  660
STLSKAVDGH GKGNQSTALQ VKDDSIDNAS GAEGDLSEED NTASGPEGYL SEEDNTASGA  720
EGDLSESEDS DEFWKPFITS LPVEKSINAD NGYVSPKEQK SNLKKDESED IDEAKSEETS  780
NSEAKSSKSV KRNKWKTEEV KKLIGMREEL SERFQVVKGR MALWEEISQK LLADGICRSP  840
GQCKSLWTSL VVKYEGIKNE DRKKSWPYIE DMERIMSDKE APAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A6e-877863619560RIBONUCLEASE J
5a0t_B6e-877863619560RIBONUCLEASE J
5a0v_A6e-877863619560RIBONUCLEASE J
5a0v_B6e-877863619560RIBONUCLEASE J
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.629700.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-148AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581876.10.0PREDICTED: ribonuclease J isoform X1
TrEMBLI1KC490.0I1KC49_SOYBN; Uncharacterized protein
STRINGGLYMA06G17980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50993450
Representative plantOGRP30821521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein